BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005B11SP1|AL425339
(1044 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig338 1523 0.0
>3x_Contig338
Length = 1303
Score = 1523 bits (765), Expect = 0.0
Identities = 802/815 (98%), Gaps = 3/815 (0%)
Strand = Plus / Plus
Query: 233 tcttatcactatatacgaacccaatacatcgctctcttgtaaataacaagaaaaaagcca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttatcactatatacgaacccaatacatcgctctcttgtaaataacaagaaaaaagcca 60
Query: 293 ggaaaaaaaaaacaaaacgcatctttcaggtcgaacctacaccgcgttctgagtactgtt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaaaaaaaaaacaaaacgcatctttcaggtcgaacctacaccgcgttctgagtactgtt 120
Query: 353 agaaataaacgctctagaaatttttcctgcgttttcctgtcctgttttctatttktttty 412
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 121 agaaataaacgctctagaaatttttcctgcgttttcctgtcctgttttccattcgatttc 180
Query: 413 wyagaaactcacagtcgtgaaaatatgaaatgctggcgaaaacccagattttttcacaga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acagaaactcacagtcgtgaaaatatgaaatgctggcgaaaacccagattttttcacaga 240
Query: 473 tttggaaattgatatttggraggaaaaaagattcgaaggttttcatttcaattaacattt 532
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttggaaattgatatttggaaggaaaaaagattcgaaggttttcatttcaattaacattt 300
Query: 533 tgagacacccattggtagaattcgtgtttatgatctcaatttgatataaaccctctgtgt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagacacccattggtagaattcgtgtttatgatctcaatttgatataaaccctctgtgt 360
Query: 593 actattacttggaaggcgatttcagagtcattaatagcttaagtttatacccgaggtgcc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actattacttggaaggcgatttcagagtcattaatagcttaagtttatacccgaggtgcc 420
Query: 653 agaraggatagagttctattctacattgcaattgtaaccttttttattgttttattcttt 712
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agaaaggatagagttctattctacattgcaattgtaaccttttttattgttttattcttt 480
Query: 713 taatctaagtgtgttaaagaagagatctacattcactcactcacgtataccagtttattc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taatctaagtgtgttaaagaagagatctacattcactcactcacgtataccagtttattc 540
Query: 773 actcgaggaagatattgatttatatcagaatagagtttttttgttttacgttaaatttgc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actcgaggaagatattgatttatatcagaatagagtttttttgttttacgttaaatttgc 600
Query: 833 caacatagaatagcaatgtctgctgaagaatcacaacaagcacaaactgagactgcagca 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caacatagaatagcaatgtctgctgaagaatcacaacaagcacaaactgagactgcagca 660
Query: 893 ccagttccggttccagctccagctgtcgaacaggatcattccaatgaagctactacaacc 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccagttccggttccagctccagctgtcgaacaggatcattccaatgaagctactacaacc 720
Query: 953 gtcgaagagaaatcacctggagctgctaccactgctcctgctactgaggaggca-cggsa 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 721 gtcgaagagaaatcacctggagctgctaccactgctcctgctactgaggaggcaccggca 780
Query: 1012 tctg-aaagcctgcttctcaggat-acaacggtga 1044
|||| ||||||||||||||||||| ||||||||||
Sbjct: 781 tctgaaaagcctgcttctcaggataacaacggtga 815
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9622
Number of Sequences: 1807
Number of extensions: 9622
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 1044
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1028
effective length of database: 10,329,639
effective search space: 10618868892
effective search space used: 10618868892
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)